Prueba asi:  
Código SQL:
Ver original- UPDATE Empleados 
- SET Salario = Salario * 1.2 
- FROM Empleados E 
- INNER JOIN ( 
-     SELECT NumeroEmpleado, COUNT(1) TotalHabit 
-     FROM Limpieza 
-     GROUP BY NumeroEmpleado 
-     HAVING COUNT(1) = (SELECT MAX(COUNT(1)) FROM Limpieza GROUP BY NumeroEmpleado) 
- ) T ON E.Id = T.NumeroEmpleado